PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 222aa    MW: 24169.4 Da    PI: 8.5393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65550.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-081181027
                  GGTS--TTTTT-SS-SSS CS
       zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                  +++GtCk+G++Ck++H++
  MLOC_65550.1  1 MKNGTCKFGSNCKYNHPR 18
                  89**************96 PP

2zf-CCCH36.11.1e-113963327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C+++ +tG+Ck+G++CkF+H++
  MLOC_65550.1 39 EKECSYYIKTGHCKFGSTCKFHHPE 63
                  689********************96 PP

3zf-CCCH39.78.1e-13193219127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C+++++tGtCk+G++Ck++H++
  MLOC_65550.1 193 PGQPECHHYMKTGTCKFGSTCKYNHPQ 219
                   5789*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.127119IPR000571Zinc finger, CCCH-type
SMARTSM0035629118IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0143664IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-43663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-73763IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-83963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197192220IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5192219IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6195219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4198218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKNGTCKFGS NCKYNHPREG GSVQPVVLNS SGYPLRLGEK ECSYYIKTGH CKFGSTCKFH  60
HPEGPELGVV SEPPNMYPPV QQLPVSSPLP YPPLASWQLG RPSVLPGSFF PGSYPPMMHP  120
SAVMPMQGWN PYMSPMNQVA PAGGQQTVQA GPLYGLSHQG PPSAVAYGSN YASLSSSTWP  180
SSDKQEVVFP ERPGQPECHH YMKTGTCKFG STCKYNHPQY LS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3553790.0AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17.
GenBankAK3612940.0AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.11e-136PREDICTED: zinc finger CCCH domain-containing protein 5-like
SwissprotQ5NAV31e-110C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLM0Y4881e-161M0Y488_HORVD; Uncharacterized protein
STRINGMLOC_65550.21e-160(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-53C3H family protein